Network panel
Algae Dataset
Every data hub, dataset, sensor, variable, paper and limitation in one tree — and for each: where it comes from, how far back it goes, how often it captures, why it belongs in a cholera study, and why it does not work everywhere.
Highlight site
All three
Chakaria HDSS
Matlab HDSS
Dhaka City
Choosing a site greys out everything that does not apply there.
- +DATA HUBSwhere the data physically comes from
- −DATASET TYPESgrouped by what kind of water they see
- +1. Ocean colour (hyperspectral)1 datasets
- +1. Ocean colour (merged)3 datasets
- +1. Ocean colour (single sensor)5 datasets
- +2. Inland/coastal high-res6 datasets
- +3. Lake / inland operational2 datasets
- +4. Model / reanalysis1 datasets
- +5. Discovery / portal1 datasets
- −6. Derived / uncalibrated2 datasets
- +7. In-situ validation5 datasets
- −SITE-WISEwhat actually applies at each site
- −Chakaria HDSSChakariaRural COASTAL · 10 km to sea · 16 datasets apply
- ·AL01 · ESA Ocean Colour CCI v6.0 — merged multi-se…Daily / 5-day / 8-day / M… · 4 km (1 km regional available)
- ·AL02 · Copernicus Marine GlobColour — L4 gap-free …DAILY (gap-free!) · 4 km
- ·AL11 · Copernicus CDS — Satellite Ocean Colour (OC…Daily / monthly · 4 km
- ·AL06 · MODIS-Aqua Level-3 SMIDaily / 8-day / monthly · 4.6 km
- ·AL07 · SeaWiFS Level-3 SMIDaily / 8-day / monthly · 9 km (4 km avail.)
- ·AL08 · VIIRS SNPP / NOAA-20 chlorophyll (NOAA Coas…DAILY · 4 km (750 m for some SNPP products)
- ·AL13 · MODIS-Terra Level-3 SMIDaily / 8-day / monthly · 4.6 km
- ·AL03 · Sentinel-2 MSI Level-2A (harmonised)5 days (2-3 d with S2C fr… · 10 m (B2,3,4,8) / 20 m (B5 red-edge 705 nm)
- ·AL04 · Sentinel-3 OLCI — 21 bands incl. 620 nm (ph…~1-2 days (S3A + S3B) · 300 m full resolution
- ·AL05 · Landsat 5 / 7 / 8 / 9 Collection 2 Level-216 days per satellite (~8… · 30 m
- ·AL14 · Harmonized Landsat Sentinel-2 (HLS) v2.02-3 days combined · 30 m
- ·AL18 · Sentinel-2 Level-1C + ACOLITE Dark Spectrum…5 days · 10-20 m
- ·AL19 · GEE Sen2Cor L2A NDCI → chlorophyll polynomi…5 days · 10-20 m
- ·AL20 · Landsat green/blue chlorophyll proxy (2000-…16 days · 30 m
- ·AL23 · GLORIA — Global Reflectance community datas…Per sample · Point
- ·AL25 · Bangladesh Oceanographic Research Institute…Varies · Point
- −Matlab HDSSMatlabRural riverine · 250 km to sea · 11 datasets apply
- ·AL03 · Sentinel-2 MSI Level-2A (harmonised)5 days (2-3 d with S2C fr… · 10 m (B2,3,4,8) / 20 m (B5 red-edge 705 nm)
- ·AL04 · Sentinel-3 OLCI — 21 bands incl. 620 nm (ph…~1-2 days (S3A + S3B) · 300 m full resolution
- ·AL05 · Landsat 5 / 7 / 8 / 9 Collection 2 Level-216 days per satellite (~8… · 30 m
- ·AL14 · Harmonized Landsat Sentinel-2 (HLS) v2.02-3 days combined · 30 m
- ·AL16 · MODIS MOD09GA/GQ daily surface reflectance …DAILY · 250 m (b1,b2) / 500 m
- ·AL18 · Sentinel-2 Level-1C + ACOLITE Dark Spectrum…5 days · 10-20 m
- ·AL19 · GEE Sen2Cor L2A NDCI → chlorophyll polynomi…5 days · 10-20 m
- ·AL20 · Landsat green/blue chlorophyll proxy (2000-…16 days · 30 m
- ·AL22 · SeaBASS — NASA bio-Optical Archive and Stor…Per cruise/campaign · Point
- ·AL23 · GLORIA — Global Reflectance community datas…Per sample · Point
- ·AL26 · icddr,b environmental microbiology archives…FORTNIGHTLY · Point (pond)
- −Dhaka CityDhakaUrban inland · 300 km to sea · 9 datasets apply
- ·AL03 · Sentinel-2 MSI Level-2A (harmonised)5 days (2-3 d with S2C fr… · 10 m (B2,3,4,8) / 20 m (B5 red-edge 705 nm)
- ·AL05 · Landsat 5 / 7 / 8 / 9 Collection 2 Level-216 days per satellite (~8… · 30 m
- ·AL14 · Harmonized Landsat Sentinel-2 (HLS) v2.02-3 days combined · 30 m
- ·AL18 · Sentinel-2 Level-1C + ACOLITE Dark Spectrum…5 days · 10-20 m
- ·AL19 · GEE Sen2Cor L2A NDCI → chlorophyll polynomi…5 days · 10-20 m
- ·AL20 · Landsat green/blue chlorophyll proxy (2000-…16 days · 30 m
- ·AL22 · SeaBASS — NASA bio-Optical Archive and Stor…Per cruise/campaign · Point
- ·AL23 · GLORIA — Global Reflectance community datas…Per sample · Point
- ·AL24 · LIMNADES — LIMnology and remote sensing Net…Per sample · Point
- −Chakaria HDSSChakariaRural COASTAL · 10 km to sea · 16 datasets apply
- +DURATION & CAPTURE CADENCEdaily · weekly · 10-day · 16-day · monthly
- +VARIABLESwhat is computed from the bands
- +LIMITATIONSwhy not — typed and severity-ranked
- +PAPERSthe evidence, DOI-linked
6. Derived / uncalibrated
AL20 · Landsat green/blue chlorophyll proxy (2000-2015 backfill)
(your own pipeline)
C Caution
FREE
NO ACCOUNT
Source · duration · capture cadence
- Data source
- (your own pipeline)
- Access route
- GEE
- Endpoint / asset
computed in 06_algae_gee_3sites.py- Duration
- 1984 → present
- Capture cadence
- 16 days
- Resolution
30 m- Delivers
- Relative chlorophyll index only
- Command
10_algae_daily_3sites.py --sensors landsat
Why it is used for cholera.
NOT VALIDATED
Why not — catalogue limitation. Landsat has NO red-edge band, so this is a weak substitute for NDCI. It is nonetheless the ONLY way to extend your algae record back to 2000. Be explicit about this limitation in any manuscript, and consider restricting formal inference to 2017-2026 with 2000-2016 as descriptive context.
Site applicability
| Site | Verdict | Why |
|---|---|---|
| Chakaria HDSS | YES | USE WITH EXPLICIT CAVEAT |
| Matlab HDSS | YES | USE WITH EXPLICIT CAVEAT |
| Dhaka City | YES | USE WITH EXPLICIT CAVEAT |
Reliable · accessible · authentic
C Caution
Reliability tier
OPEN
Accessible
(your own pipeline)
Authentic — operator
Documentation: https://doi.org/10.3389/fmars.2019.00598
Typed limitations (1)
HIGH Landsat green/blue chlorophyll proxy is uncalibrated validation
The ratio responds to chlorophyll but the relationship is scene-specific and unvalidated for Bangladeshi water. Absolute values carry no physical meaning.
What to do: Use it for RELATIVE change and phenology only. Always state it as an index and never report it in mg/m3.